cluster_focus_peaks (xyz[, eps, min_samples]) |
Use DBSCAN to identify single particles through multiple focus planes. |
create_hdf5_archive (hdf5_path, ...[, ...]) |
Create HDF5 file structure for holograms and phase/intensity reconstructions. |
fftshift (x[, additional_shift, axes]) |
Shift the zero-frequency component to the center of the spectrum, or with some additional offset from the center. |
find_focus_plane (roi_cube[, focus_on, plot]) |
Find focus plane in a cube of reconstructed waves at different propagation distances. |
glue_focus (xyz, labels) |
Launch a glue session with focusing results. |
locate_specimens (wave_cube, positions, ...) |
Identify the (x, y, z) coordinates of a specimen. |
open_hdf5_archive (hdf5_path) |
Load and return a shampoo HDF5 archive. |
save_scaled_image (image, filename[, margin, ...]) |
Save an image to png. |
test ([package, test_path, args, plugins, ...]) |
Run the tests using py.test. |
unwrap_phase (reconstructed_wave[, seed]) |
2D phase unwrap a complex reconstructed wave. |